IL_4V8C_032

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_032 not in the Motif Atlas

Homologous match to IL_4WF9_034

Geometric discrepancy: 0.1964

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8C|1|AA|A|870
4V8C|1|AA|U|871
4V8C|1|AA|A|872
*
4V8C|1|AA|U|905
4V8C|1|AA|G|906
4V8C|1|AA|U|907

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AP

50S ribosomal protein L16

Chain AV

50S ribosomal protein L25