IL_4V8C_050
3D structure
- PDB id
- 4V8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8C_050 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.0463
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V8C|1|AA|A|1262
4V8C|1|AA|U|1263
4V8C|1|AA|G|1264
4V8C|1|AA|A|1265
4V8C|1|AA|G|1266
4V8C|1|AA|U|1267
4V8C|1|AA|A|1268
4V8C|1|AA|A|1269
*
4V8C|1|AA|U|2011
4V8C|1|AA|G|2012
4V8C|1|AA|A|2013
4V8C|1|AA|A|2014
4V8C|1|AA|A|2015
4V8C|1|AA|U|2016
4V8C|1|AA|U|2017
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain A0
- 50S ribosomal protein L17
- Chain A5
- 50S ribosomal protein L32
- Chain AF
- 50S ribosomal protein L4
- Chain AS
- 50S ribosomal protein L22
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