3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
4V8C|1|AA|A|1938, 4V8C|1|AA|U|1944
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8C_078 not in the Motif Atlas
Geometric match to IL_7A0S_072
Geometric discrepancy: 0.1467
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

4V8C|1|AA|C|1934
4V8C|1|AA|G|1935
4V8C|1|AA|A|1936
4V8C|1|AA|A|1937
4V8C|1|AA|A|1938
4V8C|1|AA|U|1939
4V8C|1|AA|U|1940
4V8C|1|AA|C|1941
4V8C|1|AA|C|1942
4V8C|1|AA|U|1943
4V8C|1|AA|U|1944
4V8C|1|AA|G|1945
*
4V8C|1|AA|C|1961
4V8C|1|AA|C|1962
4V8C|1|AA|U|1963
4V8C|1|AA|G|1964

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain AD
50S ribosomal protein L2
Chain CA
Small subunit ribosomal RNA; SSU rRNA
Chain CB
TRNA-LEU

Coloring options:


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