IL_4V8C_116

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUGGUAC*GGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15568.1

Basepair signature

cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V8C|1|AB|C|71
4V8C|1|AB|G|72
4V8C|1|AB|A|73
4V8C|1|AB|U|74
4V8C|1|AB|G|75
4V8C|1|AB|G|76
4V8C|1|AB|U|77
4V8C|1|AB|A|78
4V8C|1|AB|C|79
*
4V8C|1|AB|G|97
4V8C|1|AB|G|98
4V8C|1|AB|A|99
4V8C|1|AB|G|100
4V8C|1|AB|A|101
4V8C|1|AB|G|102
4V8C|1|AB|U|103
4V8C|1|AB|A|104
4V8C|1|AB|G|105

Current chains

Chain AB

5S RIBOSOMAL RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AP

50S ribosomal protein L16

Chain AV

50S ribosomal protein L25