3D structure

PDB id
4V8C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8C_136 not in the Motif Atlas
Homologous match to IL_5J7L_259
Geometric discrepancy: 0.1168
The information below is about IL_5J7L_259
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V8C|1|BA|C|672
4V8C|1|BA|C|673
4V8C|1|BA|G|674
*
4V8C|1|BA|C|806
4V8C|1|BA|U|807
4V8C|1|BA|G|808

Current chains

Chain BA
RNA (2912-MER)

Nearby chains

Chain BF
50S ribosomal protein L4
Chain BO
50S ribosomal protein L15

Coloring options:


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