IL_4V8C_150
3D structure
- PDB id
- 4V8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8C_150 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.3141
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
4V8C|1|BA|G|875
4V8C|1|BA|C|876
4V8C|1|BA|U|877
4V8C|1|BA|A|878
4V8C|1|BA|G|879
*
4V8C|1|BA|C|898
4V8C|1|BA|A|899
4V8C|1|BA|A|900
4V8C|1|BA|A|901
4V8C|1|BA|C|902
Current chains
- Chain BA
- RNA (2912-MER)
Nearby chains
- Chain BP
- 50S ribosomal protein L16
- Chain BV
- 50S ribosomal protein L25
- Chain DB
- Transfer RNA; tRNA
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