IL_4V8C_206

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

4V8C|1|BA|U|2167, 4V8C|1|BA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8C|1|BA|G|2124
4V8C|1|BA|G|2125
4V8C|1|BA|A|2126
4V8C|1|BA|G|2127
*
4V8C|1|BA|C|2161
4V8C|1|BA|G|2162
4V8C|1|BA|C|2163
4V8C|1|BA|C|2164
4V8C|1|BA|G|2165
4V8C|1|BA|G|2166
4V8C|1|BA|U|2167
4V8C|1|BA|G|2168
4V8C|1|BA|A|2169
4V8C|1|BA|A|2170
4V8C|1|BA|A|2171
4V8C|1|BA|U|2172
4V8C|1|BA|A|2173
4V8C|1|BA|C|2174

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

Transfer RNA; tRNA