IL_4V8C_212

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_212 not in the Motif Atlas

Homologous match to IL_7RQB_092

Geometric discrepancy: 0.0683

The information below is about IL_7RQB_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4V8C|1|BA|G|2454
4V8C|1|BA|G|2455
*
4V8C|1|BA|C|2496
4V8C|1|BA|A|2497
4V8C|1|BA|C|2498

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L16