IL_4V8C_363

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4V8C|1|DA|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_363 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.4916

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V8C|1|DA|C|1440
4V8C|1|DA|G|1441
4V8C|1|DA|G|1442
4V8C|1|DA|G|1443
4V8C|1|DA|A|1446
4V8C|1|DA|G|1447
*
4V8C|1|DA|C|1459
4V8C|1|DA|A|1460
4V8C|1|DA|G|1461

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BR

50S ribosomal protein L19

Chain DW

30S RIBOSOMAL PROTEIN S20