IL_4V8C_366

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8C_366 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.2731

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8C|1|DD|G|10
4V8C|1|DD|A|11
4V8C|1|DD|G|12
*
4V8C|1|DD|C|24
4V8C|1|DD|U|25
4V8C|1|DD|C|26

Current chains

Chain DD

TRNA-FMET

Nearby chains

Chain DN

30S RIBOSOMAL PROTEIN S11