IL_4V8D_011

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGG*CCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGGG,CCCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_011 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.2132

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V8D|1|AA|G|145
4V8D|1|AA|G|146
4V8D|1|AA|G|147
4V8D|1|AA|G|148
*
4V8D|1|AA|C|174
4V8D|1|AA|C|175
4V8D|1|AA|C|176
4V8D|1|AA|C|177

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S RIBOSOMAL PROTEIN S20