IL_4V8D_021

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_021 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1446

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8D|1|AA|G|446
4V8D|1|AA|G|447
4V8D|1|AA|A|448
4V8D|1|AA|C|449
4V8D|1|AA|G|450
*
4V8D|1|AA|C|483
4V8D|1|AA|G|484
4V8D|1|AA|G|485
4V8D|1|AA|U|486
4V8D|1|AA|A|487
4V8D|1|AA|C|488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S4

Chain AS

30S RIBOSOMAL PROTEIN S16