IL_4V8D_073

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_073 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0412

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V8D|1|BA|U|239
4V8D|1|BA|G|240
4V8D|1|BA|A|241
4V8D|1|BA|G|242
4V8D|1|BA|U|243
4V8D|1|BA|A|244
4V8D|1|BA|G|245
*
4V8D|1|BA|C|253
4V8D|1|BA|G|254
4V8D|1|BA|A|255
4V8D|1|BA|A|256
4V8D|1|BA|A|257
4V8D|1|BA|G|258

Current chains

Chain BA

RNA (2912-MER)

Nearby chains

Chain B8

50S ribosomal protein L35

Chain BO

50S ribosomal protein L15