3D structure

PDB id
4V8D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
4V8D|1|BA|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8D_104 not in the Motif Atlas
Homologous match to IL_7RQB_038
Geometric discrepancy: 0.0793
The information below is about IL_7RQB_038
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.16
Basepair signature
cWW-L-cWW
Number of instances in this motif group
116

Unit IDs

4V8D|1|BA|G|1011
4V8D|1|BA|U|1012
4V8D|1|BA|C|1013
*
4V8D|1|BA|G|1149
4V8D|1|BA|C|1150

Current chains

Chain BA
RNA (2912-MER)

Nearby chains

Chain B1
50S ribosomal protein L20
Chain BM
50S ribosomal protein L13

Coloring options:


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