IL_4V8D_126

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_126 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1052

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V8D|1|BA|A|1469
4V8D|1|BA|G|1470
4V8D|1|BA|A|1471
4V8D|1|BA|A|1472
4V8D|1|BA|G|1473
*
4V8D|1|BA|U|1520
4V8D|1|BA|G|1521
4V8D|1|BA|G|1522
4V8D|1|BA|U|1523

Current chains

Chain BA

RNA (2912-MER)

Nearby chains