IL_4V8D_192

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_192 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.0604

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4V8D|1|CA|C|132
4V8D|1|CA|U|133
4V8D|1|CA|A|134
4V8D|1|CA|C|135
4V8D|1|CA|C|136
*
4V8D|1|CA|G|227
4V8D|1|CA|A|228
4V8D|1|CA|U|229
4V8D|1|CA|G|230

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CS

30S RIBOSOMAL PROTEIN S16

Chain CW

30S RIBOSOMAL PROTEIN S20