IL_4V8D_201

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_201 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1422

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V8D|1|CA|G|409
4V8D|1|CA|G|410
4V8D|1|CA|A|411
4V8D|1|CA|A|412
4V8D|1|CA|G|413
4V8D|1|CA|A|414
4V8D|1|CA|A|415
4V8D|1|CA|G|416
*
4V8D|1|CA|U|427
4V8D|1|CA|G|428
4V8D|1|CA|U|429
4V8D|1|CA|A|430
4V8D|1|CA|A|431
4V8D|1|CA|A|432
4V8D|1|CA|C|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S4