IL_4V8D_222

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_222 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1377

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8D|1|CA|C|948
4V8D|1|CA|A|949
4V8D|1|CA|U|950
*
4V8D|1|CA|G|1231
4V8D|1|CA|U|1232
4V8D|1|CA|G|1233

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain CL

30S RIBOSOMAL PROTEIN S9

Chain CP

30S RIBOSOMAL PROTEIN S13