IL_4V8D_337

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_337 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3078

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V8D|1|DA|C|2107
4V8D|1|DA|C|2108
4V8D|1|DA|U|2109
4V8D|1|DA|G|2110
*
4V8D|1|DA|C|2179
4V8D|1|DA|U|2180
4V8D|1|DA|G|2181
4V8D|1|DA|G|2182

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CD

TRNA-TYR