IL_4V8D_342

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGC*GUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_342 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.2424

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V8D|1|DA|C|2139
4V8D|1|DA|C|2140
4V8D|1|DA|G|2141
4V8D|1|DA|C|2142
*
4V8D|1|DA|G|2149
4V8D|1|DA|U|2150
4V8D|1|DA|G|2151
4V8D|1|DA|G|2152

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CN

30S RIBOSOMAL PROTEIN S11