IL_4V8D_348

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_348 not in the Motif Atlas

Homologous match to IL_4WF9_091

Geometric discrepancy: 0.1478

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

4V8D|1|DA|U|2457
4V8D|1|DA|G|2458
4V8D|1|DA|A|2459
*
4V8D|1|DA|U|2493
4V8D|1|DA|G|2494

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CB

TRNA-TYR

Chain DP

50S ribosomal protein L16