IL_4V8D_372

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCGC*GUGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_372 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3368

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4V8D|1|AA|C|186
4V8D|1|AA|C|186|||A
4V8D|1|AA|C|186|||B
4V8D|1|AA|G|186|||C
4V8D|1|AA|C|186|||D
*
4V8D|1|AA|G|191|||C
4V8D|1|AA|U|191|||D
4V8D|1|AA|G|191|||E
4V8D|1|AA|U|191|||F
4V8D|1|AA|G|191

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S RIBOSOMAL PROTEIN S20