IL_4V8D_375

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_375 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.0986

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4V8D|1|AA|C|1259
4V8D|1|AA|C|1260
4V8D|1|AA|A|1261
4V8D|1|AA|C|1262
*
4V8D|1|AA|G|1273
4V8D|1|AA|G|1274
4V8D|1|AA|A|1275
4V8D|1|AA|G|1276

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AX

30S RIBOSOMAL PROTEIN THX