IL_4V8D_388

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCCCCAAGUC*GCG

Length

13 nucleotides

Bulged bases

4V8D|1|DA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8D|1|DA|C|1004
4V8D|1|DA|C|1005
4V8D|1|DA|C|1006
4V8D|1|DA|C|1007
4V8D|1|DA|C|1008
4V8D|1|DA|A|1009
4V8D|1|DA|A|1010
4V8D|1|DA|G|1011
4V8D|1|DA|U|1012
4V8D|1|DA|C|1013
*
4V8D|1|DA|G|1149
4V8D|1|DA|C|1150
4V8D|1|DA|G|1151

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D1

50S ribosomal protein L20

Chain DM

50S ribosomal protein L13