IL_4V8D_398

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_398 not in the Motif Atlas

Homologous match to IL_9DFE_022

Geometric discrepancy: 0.089

The information below is about IL_9DFE_022

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

4V8D|1|DA|C|837
4V8D|1|DA|C|838
*
4V8D|1|DA|G|940
4V8D|1|DA|A|941
4V8D|1|DA|G|942

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DO

50S ribosomal protein L15