IL_4V8D_399

3D structure

PDB id

4V8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

4V8D|1|DA|U|877, 4V8D|1|DA|A|899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8D_399 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.4513

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8D|1|DA|G|875
4V8D|1|DA|C|876
4V8D|1|DA|U|877
4V8D|1|DA|A|878
4V8D|1|DA|G|879
*
4V8D|1|DA|C|898
4V8D|1|DA|A|899
4V8D|1|DA|A|900
4V8D|1|DA|A|901
4V8D|1|DA|C|902

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain CB

TRNA-TYR

Chain DP

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25