IL_4V8F_002

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_002 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0734

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8F|1|AA|G|24
4V8F|1|AA|U|25
4V8F|1|AA|G|26
4V8F|1|AA|G|27
4V8F|1|AA|A|28
4V8F|1|AA|U|29
4V8F|1|AA|G|30
*
4V8F|1|AA|C|510
4V8F|1|AA|U|511
4V8F|1|AA|G|512
4V8F|1|AA|A|513
4V8F|1|AA|A|514
4V8F|1|AA|A|515
4V8F|1|AA|C|516

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A1

50S ribosomal protein L20

Chain A5

50S ribosomal protein L32

Chain AS

50S ribosomal protein L22