3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GC*GAC
Length
5 nucleotides
Bulged bases
4V8F|1|AA|A|443
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_003 not in the Motif Atlas
Homologous match to IL_7RQB_002
Geometric discrepancy: 0.0819
The information below is about IL_7RQB_002
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

4V8F|1|AA|G|36
4V8F|1|AA|C|37
*
4V8F|1|AA|G|442
4V8F|1|AA|A|443
4V8F|1|AA|C|444

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

Chain A1
50S ribosomal protein L20
Chain AF
50S ribosomal protein L4

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1453 s