IL_4V8F_019

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V8F|1|AA|G|801, 4V8F|1|AA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_019 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0834

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V8F|1|AA|G|674
4V8F|1|AA|A|675
4V8F|1|AA|A|676
4V8F|1|AA|A|677
4V8F|1|AA|C|678
*
4V8F|1|AA|G|799
4V8F|1|AA|A|800
4V8F|1|AA|G|801
4V8F|1|AA|A|802
4V8F|1|AA|U|803
4V8F|1|AA|A|804
4V8F|1|AA|G|805
4V8F|1|AA|C|806

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AO

50S ribosomal protein L15