IL_4V8F_024
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 4V8F|1|AA|G|776, 4V8F|1|AA|A|788, 4V8F|1|AA|A|789, 4V8F|1|AA|C|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_024 not in the Motif Atlas
- Geometric match to IL_7RQB_023
- Geometric discrepancy: 0.0563
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8F|1|AA|G|775
4V8F|1|AA|G|776
4V8F|1|AA|A|777
*
4V8F|1|AA|U|787
4V8F|1|AA|A|788
4V8F|1|AA|A|789
4V8F|1|AA|C|790
4V8F|1|AA|C|791
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain A7
- 50S ribosomal protein L34
- Chain AD
- 50S ribosomal protein L2
- Chain AF
- 50S ribosomal protein L4
- Chain AS
- 50S ribosomal protein L22
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