IL_4V8F_026

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

4V8F|1|AA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_026 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.2573

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8F|1|AA|C|844
4V8F|1|AA|G|845
4V8F|1|AA|C|846
*
4V8F|1|AA|G|931
4V8F|1|AA|G|932
4V8F|1|AA|A|933
4V8F|1|AA|G|934

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AX

50S ribosomal protein L30