IL_4V8F_040
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 4V8F|1|AA|U|1033
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_040 not in the Motif Atlas
- Homologous match to IL_7RQB_041
- Geometric discrepancy: 0.146
- The information below is about IL_7RQB_041
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_43275.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
4V8F|1|AA|G|1031
4V8F|1|AA|A|1032
4V8F|1|AA|U|1033
4V8F|1|AA|G|1034
*
4V8F|1|AA|C|1121
4V8F|1|AA|G|1122
4V8F|1|AA|C|1123
Current chains
- Chain AA
- RNA (2912-MER)
Nearby chains
- Chain AH
- 50S ribosomal protein L6
- Chain AP
- 50S ribosomal protein L16
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