3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
4V8F|1|AA|A|1088
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_043 not in the Motif Atlas
Homologous match to IL_7RQB_044
Geometric discrepancy: 0.4145
The information below is about IL_7RQB_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8F|1|AA|G|1087
4V8F|1|AA|A|1088
4V8F|1|AA|G|1089
4V8F|1|AA|U|1090
4V8F|1|AA|G|1091
*
4V8F|1|AA|C|1100
4V8F|1|AA|U|1101
4V8F|1|AA|C|1102

Current chains

Chain AA
RNA (2912-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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