IL_4V8F_043

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V8F|1|AA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_043 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.4145

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|AA|G|1087
4V8F|1|AA|A|1088
4V8F|1|AA|G|1089
4V8F|1|AA|U|1090
4V8F|1|AA|G|1091
*
4V8F|1|AA|C|1100
4V8F|1|AA|U|1101
4V8F|1|AA|C|1102

Current chains

Chain AA

RNA (2912-MER)

Nearby chains