IL_4V8F_046

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4V8F|1|AA|U|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_046 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.2193

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8F|1|AA|C|1202
4V8F|1|AA|G|1203
4V8F|1|AA|A|1204
4V8F|1|AA|U|1205
4V8F|1|AA|G|1206
*
4V8F|1|AA|U|1240
4V8F|1|AA|A|1241
4V8F|1|AA|A|1242
4V8F|1|AA|G|1243

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AO

50S ribosomal protein L15