IL_4V8F_079

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

4V8F|1|AA|C|2055, 4V8F|1|AA|C|2612, 4V8F|1|AA|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_079 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.0877

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8F|1|AA|A|2054
4V8F|1|AA|C|2055
4V8F|1|AA|G|2056
4V8F|1|AA|A|2057
*
4V8F|1|AA|U|2611
4V8F|1|AA|C|2612
4V8F|1|AA|U|2613
4V8F|1|AA|A|2614
4V8F|1|AA|U|2615

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain A5

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3

Chain AS

50S ribosomal protein L22