IL_4V8F_081

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4V8F|1|AA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_081 not in the Motif Atlas

Homologous match to IL_5J7L_324

Geometric discrepancy: 0.1152

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V8F|1|AA|G|2070
4V8F|1|AA|A|2071
*
4V8F|1|AA|U|2438
4V8F|1|AA|A|2439
4V8F|1|AA|C|2440
4V8F|1|AA|C|2441

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BC

Transfer RNA; tRNA