IL_4V8F_083

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUG*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_083 not in the Motif Atlas

Homologous match to IL_7RQB_083

Geometric discrepancy: 0.0928

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

4V8F|1|AA|C|2085
4V8F|1|AA|U|2086
4V8F|1|AA|G|2087
*
4V8F|1|AA|U|2232
4V8F|1|AA|U|2233
4V8F|1|AA|G|2234

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AZ

50S ribosomal protein L28

Chain BD

TRNA-TYR