IL_4V8F_101

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V8F|1|AA|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_101 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.175

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V8F|1|AA|C|2591
4V8F|1|AA|G|2592
*
4V8F|1|AA|C|2601
4V8F|1|AA|A|2602
4V8F|1|AA|G|2603

Current chains

Chain AA

RNA (2912-MER)

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BB

TRNA-TYR

Chain BC

Transfer RNA; tRNA