IL_4V8F_132

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

4V8F|1|BA|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_132 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.0954

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V8F|1|BA|U|367
4V8F|1|BA|U|368
4V8F|1|BA|C|369
*
4V8F|1|BA|G|392
4V8F|1|BA|A|393

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BS

30S RIBOSOMAL PROTEIN S16

Chain DK

50S ribosomal protein L9