IL_4V8F_135

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGGAAGAAG*UGUAAACU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|BA|A|408
4V8F|1|BA|G|409
4V8F|1|BA|G|410
4V8F|1|BA|A|411
4V8F|1|BA|A|412
4V8F|1|BA|G|413
4V8F|1|BA|A|414
4V8F|1|BA|A|415
4V8F|1|BA|G|416
*
4V8F|1|BA|U|427
4V8F|1|BA|G|428
4V8F|1|BA|U|429
4V8F|1|BA|A|430
4V8F|1|BA|A|431
4V8F|1|BA|A|432
4V8F|1|BA|C|433
4V8F|1|BA|U|434

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S RIBOSOMAL PROTEIN S4

Chain DK

50S ribosomal protein L9