3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
AGGAAGAAG*UGUAAACU
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V8F|1|BA|A|408
4V8F|1|BA|G|409
4V8F|1|BA|G|410
4V8F|1|BA|A|411
4V8F|1|BA|A|412
4V8F|1|BA|G|413
4V8F|1|BA|A|414
4V8F|1|BA|A|415
4V8F|1|BA|G|416
*
4V8F|1|BA|U|427
4V8F|1|BA|G|428
4V8F|1|BA|U|429
4V8F|1|BA|A|430
4V8F|1|BA|A|431
4V8F|1|BA|A|432
4V8F|1|BA|C|433
4V8F|1|BA|U|434

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BG
30S RIBOSOMAL PROTEIN S4
Chain DK
50S ribosomal protein L9

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2047 s