IL_4V8F_145

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GUGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_145 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.3113

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

4V8F|1|BA|G|654
4V8F|1|BA|A|655
4V8F|1|BA|C|656
*
4V8F|1|BA|G|750
4V8F|1|BA|U|751
4V8F|1|BA|G|752
4V8F|1|BA|A|753
4V8F|1|BA|C|754

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BK

30S RIBOSOMAL PROTEIN S8

Chain BR

30S RIBOSOMAL PROTEIN S15