IL_4V8F_145
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAC*GUGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_145 not in the Motif Atlas
- Geometric match to IL_7RQB_093
- Geometric discrepancy: 0.3113
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
4V8F|1|BA|G|654
4V8F|1|BA|A|655
4V8F|1|BA|C|656
*
4V8F|1|BA|G|750
4V8F|1|BA|U|751
4V8F|1|BA|G|752
4V8F|1|BA|A|753
4V8F|1|BA|C|754
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BK
- 30S RIBOSOMAL PROTEIN S8
- Chain BR
- 30S RIBOSOMAL PROTEIN S15
Coloring options: