IL_4V8F_156
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGU*AUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_156 not in the Motif Atlas
- Geometric match to IL_4TS2_003
- Geometric discrepancy: 0.2415
- The information below is about IL_4TS2_003
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
4V8F|1|BA|G|941
4V8F|1|BA|G|942
4V8F|1|BA|U|943
*
4V8F|1|BA|A|1340
4V8F|1|BA|U|1341
4V8F|1|BA|C|1342
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BC
- Transfer RNA; tRNA
- Chain BD
- TRNA-TYR
- Chain BJ
- 30S RIBOSOMAL PROTEIN S7
- Chain BL
- 30S RIBOSOMAL PROTEIN S9
Coloring options: