IL_4V8F_156

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_156 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2415

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8F|1|BA|G|941
4V8F|1|BA|G|942
4V8F|1|BA|U|943
*
4V8F|1|BA|A|1340
4V8F|1|BA|U|1341
4V8F|1|BA|C|1342

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

Transfer RNA; tRNA

Chain BD

TRNA-TYR

Chain BJ

30S RIBOSOMAL PROTEIN S7

Chain BL

30S RIBOSOMAL PROTEIN S9