3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGU*AUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_156 not in the Motif Atlas
Geometric match to IL_4TS2_003
Geometric discrepancy: 0.2415
The information below is about IL_4TS2_003
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

4V8F|1|BA|G|941
4V8F|1|BA|G|942
4V8F|1|BA|U|943
*
4V8F|1|BA|A|1340
4V8F|1|BA|U|1341
4V8F|1|BA|C|1342

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain BC
Transfer RNA; tRNA
Chain BD
TRNA-TYR
Chain BJ
30S RIBOSOMAL PROTEIN S7
Chain BL
30S RIBOSOMAL PROTEIN S9

Coloring options:


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