IL_4V8F_163
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 4V8F|1|BA|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_163 not in the Motif Atlas
- Homologous match to IL_4LFB_044
- Geometric discrepancy: 0.1003
- The information below is about IL_4LFB_044
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8F|1|BA|U|1052
4V8F|1|BA|G|1053
4V8F|1|BA|C|1054
4V8F|1|BA|A|1055
4V8F|1|BA|U|1056
*
4V8F|1|BA|A|1204
4V8F|1|BA|U|1205
4V8F|1|BA|G|1206
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain B1
- MRNA
- Chain BB
- TRNA-TYR
- Chain BF
- 30S RIBOSOMAL PROTEIN S3
- Chain BM
- 30S RIBOSOMAL PROTEIN S10
- Chain BQ
- 30S RIBOSOMAL PROTEIN S14
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