IL_4V8F_167

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUU,AAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_167 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1398

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8F|1|BA|G|1120
4V8F|1|BA|U|1121
4V8F|1|BA|U|1122
*
4V8F|1|BA|A|1151
4V8F|1|BA|A|1152
4V8F|1|BA|C|1153

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S RIBOSOMAL PROTEIN S9

Chain BM

30S RIBOSOMAL PROTEIN S10

Chain BQ

30S RIBOSOMAL PROTEIN S14