IL_4V8F_174
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUC*GGU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_174 not in the Motif Atlas
- Geometric match to IL_1YZ9_001
- Geometric discrepancy: 0.1982
- The information below is about IL_1YZ9_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4V8F|1|BA|A|1350
4V8F|1|BA|U|1351
4V8F|1|BA|C|1352
*
4V8F|1|BA|G|1370
4V8F|1|BA|G|1371
4V8F|1|BA|U|1372
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BJ
- 30S RIBOSOMAL PROTEIN S7
- Chain BL
- 30S RIBOSOMAL PROTEIN S9
- Chain BM
- 30S RIBOSOMAL PROTEIN S10
- Chain BQ
- 30S RIBOSOMAL PROTEIN S14
- Chain BX
- 30S RIBOSOMAL PROTEIN THX
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