3D structure

PDB id
4V8F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8F_180 not in the Motif Atlas
Homologous match to IL_5J7L_062
Geometric discrepancy: 0.1099
The information below is about IL_5J7L_062
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

4V8F|1|BA|G|1416
4V8F|1|BA|G|1417
4V8F|1|BA|A|1418
4V8F|1|BA|G|1419
*
4V8F|1|BA|U|1481
4V8F|1|BA|G|1482
4V8F|1|BA|A|1483
4V8F|1|BA|C|1484

Current chains

Chain BA
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain BO
30S RIBOSOMAL PROTEIN S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1453 s