IL_4V8F_204

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUC,GAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_204 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1522

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8F|1|CA|C|339
4V8F|1|CA|U|340
4V8F|1|CA|C|341
*
4V8F|1|CA|G|348
4V8F|1|CA|A|349
4V8F|1|CA|G|350

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20

Chain DN

50S ribosomal protein L14