IL_4V8F_234
3D structure
- PDB id
- 4V8F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAUG*CAUG
- Length
- 10 nucleotides
- Bulged bases
- 4V8F|1|CA|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8F_234 not in the Motif Atlas
- Homologous match to IL_6CZR_365
- Geometric discrepancy: 0.2334
- The information below is about IL_6CZR_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45699.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8F|1|CA|U|1052
4V8F|1|CA|G|1053
4V8F|1|CA|C|1054
4V8F|1|CA|A|1055
4V8F|1|CA|U|1056
4V8F|1|CA|G|1057
*
4V8F|1|CA|C|1203
4V8F|1|CA|A|1204
4V8F|1|CA|U|1205
4V8F|1|CA|G|1206
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain C1
- MRNA
- Chain CB
- TRNA-TYR
- Chain CF
- 30S RIBOSOMAL PROTEIN S3
- Chain CM
- 30S RIBOSOMAL PROTEIN S10
- Chain CQ
- 30S RIBOSOMAL PROTEIN S14
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