IL_4V8F_237

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8F_237 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.1449

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V8F|1|CA|G|1061
4V8F|1|CA|U|1062
4V8F|1|CA|C|1063
*
4V8F|1|CA|G|1193
4V8F|1|CA|U|1194
4V8F|1|CA|C|1195

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain C1

MRNA

Chain CF

30S RIBOSOMAL PROTEIN S3

Chain CH

30S RIBOSOMAL PROTEIN S5

Chain CL

30S RIBOSOMAL PROTEIN S9

Chain CM

30S RIBOSOMAL PROTEIN S10

Chain CQ

30S RIBOSOMAL PROTEIN S14