IL_4V8F_239

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUGCCAGC*GGGCACUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|CA|G|1124
4V8F|1|CA|U|1125
4V8F|1|CA|U|1126
4V8F|1|CA|G|1127
4V8F|1|CA|C|1128
4V8F|1|CA|C|1129
4V8F|1|CA|A|1130
4V8F|1|CA|G|1131
4V8F|1|CA|C|1132
*
4V8F|1|CA|G|1142
4V8F|1|CA|G|1143
4V8F|1|CA|G|1144
4V8F|1|CA|C|1145
4V8F|1|CA|A|1146
4V8F|1|CA|C|1147
4V8F|1|CA|U|1148
4V8F|1|CA|C|1149

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CL

30S RIBOSOMAL PROTEIN S9

Chain CM

30S RIBOSOMAL PROTEIN S10